Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 436-maker-11951-BDM_5 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 437-maker-11975-ANL_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 439-maker-12183-BTG_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 440-maker-12217-ALI_5 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 441-maker-12217-ALI_5 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 442-maker-12305-CGP_5 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 443-maker-1251-ANM_2 | NA | NA | NA | NA | Accessory | Unknown | S .paradoxus | NA |
| 444-maker-1328-AER_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 445-maker-1361-CFF_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 446-maker-1364-CFF_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 447-maker-137-YCE | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 448-maker-1388-APK_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 449-maker-1538-CHI_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 450-maker-1646-AQT_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 451-maker-1652-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |