Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 542-maker-9908-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 543-maker-9909-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 544-maker-9974-YCF | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 558-snap_masked-10193-AMH_5 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 559-snap_masked-10743-CDF_1 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 560-snap_masked-10934-AEN_3 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 561-snap_masked-11086-BAF_6 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 562-snap_masked-1121-BNL_4 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 563-snap_masked-11216-CPN_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 564-snap_masked-11538-CPG_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 565-snap_masked-11590-BAL_7 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 566-snap_masked-11626-ASB_2 | NA | NA | NA | NA | Accessory | candidate HGT | Meyerozyma sp. | Meyerozyma guilliermondii / Pichia membrafaciens |
| 567-snap_masked-1163-YCM | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 568-snap_masked-11855-BEF_7 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 569-snap_masked-11951-BDM_5 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |