Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 570-snap_masked-1208-YCM | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 571-snap_masked-12121-AFL_5 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 572-snap_masked-12142-CPK_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 573-snap_masked-1220-ANM_2 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 574-snap_masked-12218-ALI_5 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 575-snap_masked-125-YCE | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 576-snap_masked-136-YCE | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 577-snap_masked-1450-AAT_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 578-snap_masked-1455-AAT_3 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 579-snap_masked-1627-CLR_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 580-snap_masked-1649-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 581-snap_masked-1653-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 582-snap_masked-1665-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 583-snap_masked-1698-AIE_1 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 584-snap_masked-1700-AIE_1 | NA | NA | NA | NA | Core | NA | NA | NA |