Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 630-snap_masked-4255-BCN_8 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 631-snap_masked-4255-BCN_8 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 632-snap_masked-4255-BCN_8 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 633-snap_masked-4265-BCN_8 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 634-snap_masked-429-CHR_4 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 635-snap_masked-4313-BND_3 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 636-snap_masked-4463-APH_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 637-snap_masked-4547-CCV_1 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 638-snap_masked-477-AFG_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 639-snap_masked-4776-BCQ_8 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 640-snap_masked-4777-BCQ_8 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 641-snap_masked-4866-BCP_8 | NA | NA | NA | NA | Accessory | candidate HGT | Candida | Torulaspora delbrueckii CBS 1146 chr 7 / Tetrapisispora blattae |
| 642-snap_masked-4866-BCP_8 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 643-snap_masked-4876-BCP_8 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 644-snap_masked-4896-BLT_2 | NA | NA | NA | NA | Accessory | HGT | NA | S.paradoxus |