Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 691-snap_masked-9702-ASM_8 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 692-snap_masked-971-AFD_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 693-snap_masked-9884-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 694-snap_masked-9885-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 695-snap_masked-9891-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 696-snap_masked-9892-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 697-snap_masked-9894-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 698-snap_masked-9901-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 699-snap_masked-9902-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 700-snap_masked-9906-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 701-snap_masked-9909-CPR_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 702-snap_masked-991-AFD_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 703-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 704-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 705-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |