Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 706-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 707-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 708-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 709-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 710-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 711-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 712-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 713-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 714-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 715-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 716-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 717-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 718-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 719-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 720-augustus_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |