Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 736-augustus_masked-AIE_1-5050 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 737-augustus_masked-AIE_1-5050 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 738-augustus_masked-AIE_1-5050 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 739-augustus_masked-AIE_1-5050 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 740-augustus_masked-AIE_1-5050 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 741-augustus_masked-CCH_4-6757 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 742-augustus_masked-YBR-7232 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 743-augustus_masked-AQA_4-7171 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 744-augustus_masked-CPR_4-17586 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 745-augustus_masked-YBR-7232 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 746-augustus_masked-YBR-7232 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 747-augustus_masked-CQS_4-6447 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 748-augustus_masked-CDN_4-6227 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 749-augustus_masked-YDM-5142 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 750-augustus_masked-YDM-5142 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |