Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 751-augustus_masked-BMB_1-4633 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 752-augustus_masked-BKC_1-8603 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 753-augustus_masked-ABL_5-4898 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 754-augustus_masked-AHM_1-7103 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 755-augustus_masked-AHM_1-7103 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 756-augustus_masked-AHM_1-7103 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 757-augustus_masked-AHM_1-7103 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 758-augustus_masked-CPN_4-15699 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 759-augustus_masked-CPN_4-15699 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 760-augustus_masked-CPN_4-15699 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 761-augustus_masked-CPN_4-15699 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 762-augustus_masked-CPN_4-15699 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 763-augustus_masked-CDT_2-5331 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 764-augustus_masked-CDT_2-5331 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 765-augustus_masked-CDT_2-5331 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |