Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 766-augustus_masked-CDT_2-5331 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 767-augustus_masked-CDT_2-5331 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 768-augustus_masked-CAR_3-5886 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 769-augustus_masked-BVF_5-14262 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 770-augustus_masked-AKG_3-6639 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 771-augustus_masked-AKG_3-6639 | NA | NA | NA | NA | Accessory | candidate HGT | Naumovzyma | NA |
| 772-augustus_masked-AHA_2-9651 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 773-augustus_masked-CPB_4_C4VAEACXX.IND41b-15669 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 774-augustus_masked-ANS_2-7107 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 775-augustus_masked-CEM_2-7330 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 776-augustus_masked-CIH_2-20570 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 778-augustus_masked-CPQ_4-15250 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 779-augustus_masked-CPQ_4-15250 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 780-augustus_masked-CPQ_4-15250 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 781-augustus_masked-BBM_6-7237 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |