Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 797-augustus_masked-YAE-4456 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 798-augustus_masked-ALI_5-14966 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 799-augustus_masked-AQD_4-6774 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 800-augustus_masked-BAL_7-7460 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 801-augustus_masked-BAL_7-7460 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 802-augustus_masked-CPA_4-16362 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 803-augustus_masked-ATQ_7-5187 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 804-augustus_masked-ATQ_7-5187 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 805-augustus_masked-ATQ_7-5187 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 806-augustus_masked-ATQ_7-5187 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 807-augustus_masked-ATQ_7-5187 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 808-augustus_masked-ATQ_7-5187 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 809-augustus_masked-ATQ_7-5187 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 810-augustus_masked-CQS_4-6444 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 811-augustus_masked-BTV_5-19680 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |