Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 827-augustus_masked-YCL-7822 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 828-augustus_masked-YCL-7822 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 829-augustus_masked-YCL-7822 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 830-augustus_masked-BBM_6-7257 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 831-augustus_masked-BBM_6-7257 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 832-augustus_masked-BBM_6-7257 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 833-augustus_masked-CCH_4-6793 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 834-augustus_masked-CPL_4-15597 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 835-augustus_masked-CPL_4-15597 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 836-augustus_masked-YCH-6499 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 837-augustus_masked-AMA_5-10173 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 839-augustus_masked-BDM_5-23191 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 840-augustus_masked-CPM_4-14459 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 841-augustus_masked-BBM_6-7255 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 842-augustus_masked-BBM_6-7255 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |